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Migrating from ECS to EKS: Why It’s Time to Make the Shift – kapstan

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As businesses scale, so do their application and infrastructure needs. Many companies initially choose Amazon ECS (Elastic Container Service) for its simplicity and tight integration with other AWS services. But as applications grow in complexity and demand more flexibility, organizations often find themselves outgrowing ECS.

That’s when the move from ECS to EKS (Elastic Kubernetes Service) becomes not just a consideration—but a strategic necessity.

In this article, we’ll explore the technical and business motivations behind migrating from ECS to EKS, the challenges involved, and how Kapstan supports companies through a smooth, well-architected transition.


Why Move from ECS to EKS?

Amazon ECS is a great place to start with containers—it’s AWS-managed, opinionated, and removes much of the infrastructure burden. However, ECS has limitations that become apparent as your team or app architecture evolves.

Here’s why businesses are increasingly moving from ECS to EKS:

1. Vendor Lock-In

ECS is a proprietary service. While it abstracts a lot of complexity, it also tightly couples your container orchestration to AWS. If you ever want to run workloads in a hybrid or multi-cloud environment, ECS becomes a bottleneck. EKS, on the other hand, is a Kubernetes-based service that aligns with open standards, providing greater portability and long-term flexibility.

2. Advanced Workload Orchestration

Kubernetes offers rich features that ECS lacks, including:

  • Custom controllers and CRDs (Custom Resource Definitions)

  • Fine-grained pod scheduling

  • Advanced autoscaling (like Karpenter or Cluster Autoscaler)

  • Network policies for pod-level security

If your team is building modern, microservices-based applications, these features are invaluable.

3. Extensibility and Ecosystem

With EKS, you gain access to the entire Kubernetes ecosystem:

  • Observability: Prometheus, Grafana, Loki, Jaeger

  • GitOps: ArgoCD, Flux

  • Security: OPA, Kyverno

  • CI/CD: Tekton, Jenkins X

Migrating from ECS to EKS allows you to adopt cloud-native tooling at every layer of the software lifecycle.


Common Use Cases for ECS to EKS Migration

  • Scaling ML Workloads: Kubernetes integrates better with tools like Kubeflow, Ray, and MLFlow.

  • Multi-region Deployments: Kubernetes’ abstraction supports consistent deployments across regions and clouds.

  • Platform Engineering: Organizations adopting internal developer platforms benefit from Kubernetes APIs and custom automation.


Key Considerations Before Migrating

Migrating from ECS to EKS isn’t a lift-and-shift. ECS and EKS are architecturally different. Kapstan recommends evaluating the following areas before starting the transition:

1. Infrastructure as Code

In ECS, you may rely heavily on CloudFormation or the ECS console. In EKS, Infrastructure as Code (IaC) becomes essential. Tools like Terraform, Pulumi, or Crossplane are commonly used to define clusters, node groups, and workloads.

2. Service Discovery and Networking

ECS handles service discovery via AWS Cloud Map and internal ALBs. In EKS, service discovery can be handled via:

  • Kubernetes DNS

  • Istio or Linkerd (for service meshes)

  • AWS Load Balancer Controller (for ingress)

You’ll need to map existing ECS services to Kubernetes Services, Ingresses, and possibly use ServiceMesh patterns for complex topologies.

3. Security and IAM

EKS uses Kubernetes-native RBAC in addition to AWS IAM. You’ll need to plan for:

  • Fine-grained access controls

  • Pod Identity (IRSA)

  • Admission controllers and OPA policies


How Kapstan Supports ECS to EKS Migrations

At Kapstan, we’ve helped multiple clients in fintech, e-commerce, and SaaS make the successful leap from ECS to EKS. Here’s our approach:

✅ Assessment and Audit

We begin with a detailed audit of your ECS workloads—task definitions, service discovery setup, networking, scaling policies, and CI/CD pipelines. From there, we build a migration plan.

✅ Infrastructure Blueprint

Kapstan provides a production-ready, hardened EKS blueprint using Terraform or Helm. This includes:

  • Node groups (including Fargate profiles if needed)

  • VPC, subnets, and IAM roles

  • Observability stack (Prometheus, Grafana, Loki)

  • Ingress via ALB or NGINX controller

✅ Workload Porting

We convert your ECS task definitions and services into Kubernetes Deployments, StatefulSets, Services, and ConfigMaps. ECS service discovery is mapped to Kubernetes-native mechanisms.

✅ CI/CD Integration

Kapstan ensures your EKS workloads integrate cleanly into your existing CI/CD tooling—whether that’s GitHub Actions, CodePipeline, or Jenkins. We also enable GitOps workflows if desired.

✅ Testing and Cutover

We deploy workloads to staging EKS environments first, run performance/load tests, and execute a blue-green or canary cutover strategy to minimize downtime.


Case Study: Reducing Cost and Improving Flexibility with EKS

A recent Kapstan client—a data analytics platform—ran 100+ ECS services but faced growing pain with networking limits and lack of observability. By migrating from ECS to EKS, they:

  • Improved deployment velocity by 35%

  • Reduced cloud costs by 28% via smarter autoscaling

  • Gained full-stack observability using open-source tools

  • Laid the foundation for multi-cloud redundancy


Final Thoughts

While ECS is a solid entry point for container orchestration, it can become limiting as your applications and teams grow. Migrating from ECS to EKS opens up new doors for flexibility, scalability, and developer productivity—all while aligning with industry-standard tooling.

At Kapstan, we specialize in cloud-native transformations and bring the deep technical expertise needed for a frictionless ECS to EKS migration. Whether you’re modernizing legacy applications or scaling cutting-edge workloads, our team can help you design and execute a migration plan tailored to your business.


  • Migrating from ECS to EKS: Why It’s Time to Make the Shift
  • Migrate from ECS to EKS with ease. Discover why EKS is the future of scalable container orchestration and how Kapstan simplifies your transition.
  • ECS to EKS

Kapstan ‎io

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